PUKYONG

돌돔 (Oplegnathus fasciatus, Perciformes)으로부터 발굴된 항균 펩타이드 hepcidin의 유전자 구조 및 발현 기능에 관한 연구

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Alternative Title
Gene structure and transcriptional regulations of hepcidin, an antibacterial peptide in Oplegnathus fasciatus (Perciformes)
Abstract
Hepcidin is a key peptide that plays an important role in the innate immune systems of both mammals and teleost fish. Multiple isoforms of hepcidin precursors (RbHEPC-1, -2, -3 and -4) were isolated from a marine teleost, rockbream (Oplegnathus fasciatus) at both RNA and genomic levels, and tissue-specific expression profiles under various stimulated conditions such as bacterial infection, iron overload and viral infection were characterized based on “electronic RT-PCR (redundancy analysis of RT-PCR clones)” and RT/real-time PCR. Rockbream hepcidin isoforms shared a high sequence identity each other and also shared conserved features with the orthologues from other vertebrate animals. The 5´-flanking regions of rockbream hepcidin genes represented typical binding sites for the transcription factors including C/EBP, HNF, AP and/or IL6/STAT. Genomic Southern blot hybridization analysis revealed the presence of multiple copies of hepcidin genes on the rockbream genome with highly polymorphic restriction patterns. Hepcidin precursors predominantly existed in liver and to a quite lesser extent, in other tissues with differential distribution of each isoform among tissues. Hepcidin mRNAs in liver, intestine, kidney and spleen of juvenile rockbreams were highly upregulated during challenges using various bacterial species (up to 7200 fold), iron overloading (up to more than 3400 fold) and viral (rockbream iridovirus) infection (up to more than 30 fold). Expression patterns of hepcidin isoforms during those treatments were largely governed by tissue types and also affected by kinds of stimulators. In overall, the significant induction of the isoform RbHEPC-2 was found in responsive to bacterial infection and iron overloading especially in kidney and spleen of juveniles, whereas the RbHEPC-1 responded sensitively to viral infection in liver and intestine of fingerlings. In addition, partially, improperly or alternatively spliced forms of hepcidin transcripts were identified and the partially processed RNA form was significantly induced by bacterial infection and iron overloading. Rockbream hepcidin genes (rbhepc-1, -2, -3 and -4) shared high similarity with each other in the cDNA and genomic sequence. However, it seems that small single nucleotide polymorphisms in the promoter and/or coding region may confer potentially unique function on each of hepcidin isoforms. Differential gene regulation of these multiple hepcidin isoforms were tissue-, stimulus- and isoform-specific during the biological stimulatory treatments. Furthermore, several variant hepcidin precursors including partially spliced RNA were identified for the first time in the present study. Knowledge obtained in this study provides a good basis to understand the innate immunity of fish, and consequently be useful to develop effective strategies for control of infectious diseases in aquaculture-relevant fish species. From the present advance, the next challenges may be the functional characterizations of various transcriptional elements and mature hepcidin peptides in order to better understand the complex cross-talk between various hepcidin isoforms in teleost species.
Author(s)
조영선
Issued Date
2008
Awarded Date
2008. 8
Type
Dissertation
Keyword
돌돔 Oplegnathus fasciatus Perciformes 항균 펩타이드 hepcidin 유전자 구조 및 발현 기능
Publisher
부경대학교 대학원
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/11034
http://pknu.dcollection.net/jsp/common/DcLoOrgPer.jsp?sItemId=000001955468
Alternative Author(s)
Cho, Young Sun
Affiliation
부경대학교 대학원
Department
대학원 해양생명공학협동과정
Advisor
김성구
Table Of Contents
제1장 총설 = 1
제2장 Hepcidin 유전자의 발굴 및 구조 분석 = 5
I. 서론 = 5
II. 재료 및 방법 = 10
가. 돌돔 cDNA library로부터 hepcidin mRNA 클론의 동정 = 10
나. Hepcidin isoform의 geomic ORF 클로닝 = 10
다. Hepcidin 유전자 isoform의 5'-flanking 프로모터 영역의 클로닝 = 11
라. 생물정보 분석 = 13
마. Genomic Southern blot hybridization 분석 = 14
III. 결과 = 19
가. 돌돔 hepcidin isoform cDNA 유전자들의 염기서열 특징 = 19
나. 돌돔 hepcidin isoform들의 유추 아미노산 서열의 특징 = 21
다. 돌돔 hepcidin isoform들의 genomic ORF 구조 = 22
라. 5'-flanking 프로모터 영역의 염기서열 특징 = 28
마. Genomic Southern blot 및 organization = 32
IV. 고찰 = 37
제3장 Hepcidin 유전자의 분자 발현 기능 분석 = 44
I. 서론 = 44
II. 재료 및 방법 = 47
가. 돌돔 hepcidin mRNA 전구체의 조직 발현 분포 분석 = 47
나. Hepcidin isoform의 조직별 분포 빈도 = 49
다. In vivo 박테리아 감염에 의한 hepcidin 유전자의 유도 발현 = 51
라. Iron overloading에 의한 hepcidin 유전자의 유도 발현 = 52
마. 바이러스 감염에 의한 hepcidin 유전자의 유도 발현 = 53
바. Real-time RT-PCR을 이용한 hepcidin transcripts의 정량화 = 53
사. 실험 자극에 대한 조직별 hepcidin isoform의 발현 빈도 변화 = 54
III. 결과 = 56
가. Hepcidin mRNA의 조직 발현 양상 = 56
나. 조직간 hepcidin isoform의 상대 분포 빈도 = 56
다. 박테리아 감염에 의한 hepcidin mRNA의 유도 발현 = 62
라. Iron overloading에 의한 hepcidin transcripts의 상승 조절 = 68
마. RBIV 감염에 의한 hepcidin mRNA의 유도 발현 = 68
바. 박테리아 감염에 의한 조직 특이적 hepcidin isoform의 발현 분포 및 빈도 변화 = 70
사. Iron overloading 시 hepcidin isoform 간의 발현 분포 및 빈도 변화 = 74
아. Partially spliced hepcidin RNA의 발현 양상 = 75
자. 바이러스 감염에 의한 hepcidin isoform 간의 발현 분포 및 빈도 변화 = 76
IV. 고찰 = 81
감사의 글 = 92
인용 문헌 = 93
Degree
Doctor
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