PUKYONG

Trace Amine-Associated Receptors in Giant Grouper (Epinephelus lanceolatus) and Mackerel (Scomber japonicus)

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Abstract
Olfaction is a chemosensory perception important for feeding, reproduction, migration and predator avoidance in teleost. Olfactory signal transduction is initiated by the binding of odorants, which have low volatility or water-soluble properties, such as amino acids, nucleotides, steriods, and prostaglandin, to the olfactory receptor as stimuli. Among the four types of olfactory receptor, trace amine-associated receptors (TAARs) are responsible for detecting the trace amine-related molecules. Gnen encoding TAARs in giant grouper (Epinephelus lanceolatus) and mackerel (Scomber japonicus) included perciformes, commercially valuable species in Asia, were analyzed for deorphanizing TAARs and their interaction with ligands. Nine different clones encoding the TAAR gene were identified from giant grouper and mackerel gDNA and cDNA. To exam the evolutional relationship, phylogenetic tree was constructed and RT-PCR was conducted to exam the tissue-specific espression. RT-PCR and phylogenetic tree analysis indicate that the TAARs in mackerel and giant grouper were involved in the same clade with the other TAARs from teleost and expected to act as olfactory receptor. For functional surface expression of TAAR, nine of TAAR genes were cloned into pMT4 HA-H expression vector modified from pMT4 expression vector.
Author(s)
Mi Jin Choi
Issued Date
2015
Awarded Date
2015. 2
Type
Dissertation
Publisher
Pukyong National University
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/11939
http://pknu.dcollection.net/jsp/common/DcLoOrgPer.jsp?sItemId=000001967558
Affiliation
Department of Fisheries Biology
Department
대학원 수산생물학과
Advisor
Jong-Myoung Kim
Table Of Contents
Abstract III

Figure legend IV

Table legend VI

I. Introduction 1

Ⅱ. Materials and Methods 5

1. Materials 5
2. Genomic DNA extraction and cloning of TAAR 6
2-1. Genomic DNA extraction 6
2-2. PCR Amplification of the TAAR partial gene from giant grouper and mackerel 7
2-3. Preparation of Competent Cells 9
2-4. Transformation of recombinant plasmid into the E. coli DH5α 9
2-5. Purification of recombinant plasmid DNA 10
2-6. Identification of recombinant plasmid DNA 11
2-7. Cloning of the 5’- and 3’- end of the TAAR gene in giant grouper and mackere 11
3. Reverse transcription PCR analysis 13
3-1. Extraction of Total RNA from giant grouper and mackerel 13
3-2. Synthesis of first strand cDNA 15
3-3. PCR amplification of TAAR genes by using cDNA as a template 15
3-4. Sequence alignment and phylogenetic analysis 16
4. Cloning the TAAR gene into the expression vector 18
4-1. Construction of the Histidine taged and the HA taged expression vector 18
4-2. Cloning of TAAR gene into the expression vector 19
5. Heterologous expression of TAAR gene 21
5-1. Large-scale purification of recombinant plasmid 21
5-2. Transfection of HEK293T Cell 22
5-3. Preparation of cell extracts 23
5-4. Immunoblotting 23

Ⅲ. Results and Discussion 25
1. Amplification of partial TAAR gene in giant grouper and mackerel gDNA 25
2. Identification of 5’- and 3’- end of TAAR gene 26
3. Tissue-specific expression pattern of TAAR gene 27
4. Presence of an intron in TAAR gene 28
5. Sequence analysis of nine TAAR genes in giant grouper and mackerel
29
6. Phylogenetic tree analysis 30
7. Construction of expression vector and Heterologous Expression in animal cell 31

IV . Abstract (Korean) 54

Ⅴ. References 55

Acknowledgement 61
Degree
Master
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대학원 > 수산생물학과
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