Cloning and characterization of D-xylulose kinase (XK) from the marine bacterium, Kocuria gwangalliensis
- Abstract
- D-Xylulose is phosphorylated to D-xylulose-5-phosphate by D-xylulokinase before it enters glycolysis through the nonoxidative pentose phosphate pathway. A gene encoding a novel D-xylulose kinase (XK) from K. gwangalliensis has been sequenced and expressed in E. coli. The nucleotide sequence of XK consisted of 1419 bp encoding 463 amino acids residues and turned out to be well conserved during evolution. XK gene was subcloned into the pET-44a(+) expression vector which allows the expression of the recombinant pET44a(+)-XK plasmid. The resulting plasmid was transformed into the E. coli strain BL21(DE3) cell and the expression of the recombinant XK protein was induced by the addition of IPTG at a final concentration of 0.1 mM. The predicted size of recombinant XK protein is approximately 48 kDa including and expressed proteins was purified to homogeneity by affinity chromatography and showed enzymatic activity corresponding to D-xylulose kinase. The results obtained from this study will provide a wider base of knowledge on the primary structure and characterization of the D-xylulose kinase at the molecular level.
- Author(s)
- 이명석
- Issued Date
- 2014
- Awarded Date
- 2014. 8
- Type
- Dissertation
- Publisher
- 부경대학교
- URI
- https://repository.pknu.ac.kr:8443/handle/2021.oak/12303
http://pknu.dcollection.net/jsp/common/DcLoOrgPer.jsp?sItemId=000001967168
- Alternative Author(s)
- Lee, Myeong Seok
- Affiliation
- 대학원
- Department
- 대학원 미생물학과
- Advisor
- 김영태
- Table Of Contents
- 1. INTRODUCTION ----- 1
2. MATERIALS AND METHODS ----- 4
2.1 Bacterial strains and growth condition ----- 4
2.2 Genomic DNA extraction and construction of cosmid library ----- 4
2.3 D-xylulose kinase (XK) gene cloning & base sequence determination ----- 5
2.4 The base sequence analysis of D-xylulose kinase gene ----- 5
2.5 D-xylulose kinase overexpression ----- 6
2.6 The refinement of D-xylulose kinase using his-tag affinity chromatography ----- 6
2.7 The identification of D-xylulose kinase through western blot analysis ----- 7
2.8 In vitro enzymatic assay ----- 8
3. RESULTS ----- 9
3.1 D-xylulose kinase (XK) gene cloning from Kocuria gwangalliensis strain ----- 9
3.2 The amino acid sequence analysis of D-xylulose kinase (XK) ----- 12
3.3 The construction of recombinant DNA for expression of D-xylulose kinase (XK) in E. coli ----- 15
3.4 Protein analysis with SDS-PAGE ----- 17
3.5 The purification of D-xylulose kinase with his-tag affinity chromatography ----- 19
3.6 Enzyme kinetics ----- 22
4. DISCUSSION ----- 24
5. 국문초록 ----- 26
6. REFERENCES ----- 27
- Degree
- Master
-
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- 산업대학원 > 미생물학과
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