별불가사리(Asterina pectinifera) 유래의 cysteine rich 항균활성펩타이드의 분자적 특성과 재조합 펩타이드 생산에 관한연구
- Abstract
- Antimicrobial peptides (AMPs) are innate immune factors distributed among most life forms including animals, plants, and bacteria. Marine invertebrates like starfish, Asterina pectinifera, depend on these factors for their survival in the microbe-rich seawater and marine sediments due to lack of adaptive immune system. To this day, there has been no reports of AMPs in this starfish species. In this study, the cDNA cloning, genomic structure analysis, recombinant production, antibacterial activity assay, and transcriptional expression of previously isolated starfish AMP, Asterocin from the tube feet of P. pectinifera are reported. cDNA cloning revealed that Asterocin comprises 1078 nucleotides including a 3’ untranslated region (UTR) of 78 bp, an open reading frame (ORF) of 234 bp, and a 5’ UTR of 766 bp. The ORF encoded a preproprotein of 77 amino acids (AAs), which was composed of a signal peptide of 19 AAs, prosequence of 24 AAs, a mature peptide of 33 AAs, and one Leu residue at the C-terminal end that is removed in the post-translational modification process. The mature peptide contained 4 cysteine residues that form 2 disulfide bonds. The homology search using the mature amino acid sequence of Asterocin revealed that Asterocin had no significant homology to AMPs from other species. However, the pattern of Asterocin gene structure, which was two exons separated by one intron, was similar to the gene structure of other echinoderm AMPs. Antimicrobial activity assay demonstrated Asterocin was active regardless of its disulfide bond formation against both Gram-positive and Gram-negative bacteria. However, the most potent antimicrobial activity of Asterocin was observed when its disulfide bonds were formed. The transcriptional expression level of Asterocin was high in tube feet and coelomic epithelium. However, the expression level did not show statistically significant change when these tissues were challenged with Bacillus subtilis. Collectively, Asterocin is a novel cysteine-rich AMP from echinoderm that needs disulfide bond formation in the post-translational process for potent antimicrobial activity.
Peptides are small polymers typically composed of 50 or less amino acids. Although numerous bioactive peptides have been reported up to date, mass production of peptides are often difficult limiting their utilization in pharmaceutical or cosmetic industries. This study aims to propose an effective and economic mass production method for these bioactive peptides. The expression plasmid is constructed firstly by fusing Thioredoxin A sequence into pET28a(+) vector, then the nucleotide sequences of desired peptides with Met at the beginning were inserted using restriction enzyme sites in the multiple cloning site (pET28a(+)-TrxA-peptides). The plasmid was transformed into Escherichia coli BL21 (DE3) and overexpression of the recombinant fusion protein was induced. Then, each peptide is separated by cyanogen bromide (CNBr) digestion, which cleaves C-terminus of Met residues. This method allows the simultaneous production of different peptides. Moreover, Met changes in the CNBr digestion leaving a homoserine lactone at the C-terminus contributing to structural stability of recombinant peptide.
- Author(s)
- 이태관
- Issued Date
- 2018
- Awarded Date
- 2018.2
- Type
- Dissertation
- Publisher
- 부경대학교
- URI
- https://repository.pknu.ac.kr:8443/handle/2021.oak/14052
http://pknu.dcollection.net/common/orgView/200000010611
- Affiliation
- 부경대학교 대학원
- Department
- 대학원 생물공학과
- Advisor
- 박남규
- Table Of Contents
- Part Ⅰ. 별불가사리(Asterina pectinifera)유래의 cysteine rich AMP의 분자적 특성
표와 그림 목차 Ⅴ
초록 ⅶ
Ⅰ. 서론 2
Ⅱ. 재료 및 방법 5
1. 실험재료 5
1.1. 실험동물 5
1.2. 재료 및 시약 5
2. 실험방법 6
2.1. Asterocin의 cDNA cloning 6
2.1.1. Total RNA 추출 및 5’ RACE PCR 6
2.1.2. Ligation & Transformation 7
2.2. Asterocin의 Genomic DNA cloning 7
2.2.1. Genomic DNA 추출 및 PCR 7
2.2.2. Ligation & Transformation 8
2.3. 재조합 Asterocin 생산 10
2.3.1. 재조합 Plasmid 구축 10
2.3.2. 재조합 단백질 발현 10
2.3.3. Cell lysis & Ni-NTA 정제 11
2.3.4. Dialysis & CNBr 처리 11
2.3.5. HPLC 정제 12
2.4. 분자량 측정 12
2.5. DTT 처리 & HPLC 정제 12
2.6. 항균활성 측정 13
2.7. Asterocin precursor transcripts의 발현량 비교 14
Ⅲ. 결과 및 토론 16
1. Asterocin의 cDNA와 genomic DNA cloning 16
1.1. Asterocin의 cDNA cloning 16
1.2. Asterocin의 genomic DNA cloning 17
2. 재조합 Asterocin 생산 21
3. 분자량 측정 24
4. DTT 처리 및 HPLC 정제 27
5. 항균활성 측정 31
6. Asterocin precursor transcripts의 발현량 비교 34
Ⅳ. 참고문헌 36
Part Ⅱ. 모델 펩타이드 (αAL14)의 산업적 활용을 위한 유전자 조합과 재조합 펩타이드 발현
초록 40
Ⅰ. 서론 41
Ⅱ. 재료 및 방법 45
1. 실험동물 45
2. 실험방법 45
2.1. 재조합 펩타이드 생산 45
2.1.1. DNA Oligonucleotides 제작 45
2.1.2. 재조합 Plasmid 구축 49
2.1.3. 재조합 단백질 발현 52
2.1.4. Cell lysis & Ni-NTA 정제 52
2.1.5. Dialysis & CNBr 처리 53
2.1.6. HPLC 정제 53
2.2. 분자량 측정 53
2.3. Carboxypeptidase Y 처리 54
2.4. 항균활성 측정 54
2.5. 돌돔 내장 추출 55
2.5.1. CNBr 처리 55
2.5.2. Enzyme 처리 56
Ⅲ. 결과 및 토론 57
1. 재조합 펩타이드 발현 및 정제 57
2. 분자량 측정 58
3. Enzyme 처리 및 항균활성 측정 65
4. 돌돔 내장 추출 66
Ⅳ. 참고문헌 69
Ⅴ. 감사의 글 71
- Degree
- Master
-
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