Phenotypic and genotypic characterization of pathogenic Staphylococcus spp. isolated from diseased Thai Koi (Anabas testudineus) in Bangladesh
- Alternative Title
- 방글라데시의 Thai Koi (Anabas testudineus) 유래 병원성 포도상구균의 표현형 및 유전형적 특성
- Abstract
- Thai Koi, Anabas testudineus is one of the dominant cultured species in aquaculture farms in Bangladesh. Due to recent imprudent intensification of aquaculture industry in Bangladesh, fish farms are suffering from emerging infectious diseases; while there have been limited studies on precise pathogen identification and disease treatment measures. Therefore, this study was aimed to perform phenotypic and genotypic characterization of coagulase-negative staphylococci (CoNS) isolated from diseased farmed Thai Koi (A. testudineus) in Bangladesh. Four isolates were collected from external lesions of diseased Thai Koi, and were presumptively identified as Staphylococcus sp. by Gram-staining, oxidase/catalase test, and growth in differential and selective media. Three (SEBCP-1, SEBCP-2 and SEBCP-3) and one isolate (SCBCP-1) were identified as S. epidermidis (SE) and S. capitis (SC), respectively based on their 16S rRNA gene sequences and polymerase chain reaction using a species-specific primer set. Disk diffusion susceptibility testing showed that, the isolates are all commonly resistant against antibiotics belonging to beta-lactam, tetracycline and quinolone class. All the isolates carried blaZ and efflux protein tet(K) gene responsible for resistant against β-lactam and tetracycline. In addition, all SE strains harbored mecA gene, suggesting that they might be accounted as methicillin resistant SE (MRSE). All four isolates caused mortality (66.66-100%) in carp challenged by intraperitoneal injection, indicating they are pathogenic in fish. Three S. epidermidis strains showed strong gelatinase, lecithinase, proteolytic and beta hemolytic activity, showing their roles as a potential virulence factor, S. capitis strain showed better biofilm formation activity it might be due to the presence of icaAB gene in it. Overall findings of this study shows that, CoNS could be a threat in Bangladeshi aquaculture, and thus further studies on disease monitoring, management and development on control measures should be carried out in the nearest future.
- Author(s)
- MD. Mizanur Rahman Washim
- Issued Date
- 2020
- Awarded Date
- 2020. 2
- Type
- Dissertation
- Publisher
- 부경대학교
- URI
- https://repository.pknu.ac.kr:8443/handle/2021.oak/23744
http://pknu.dcollection.net/common/orgView/200000287438
- Affiliation
- 부경대학교 글로벌수산대학원
- Department
- 글로벌수산대학원 국제수산과학협동과정
- Advisor
- 김도형
- Table Of Contents
- 1. Introduction 1
2. Materials and Methods 5
2.1. Isolation of bacteria 5
2.2. Morphological characterization 6
2.3. Biochemical characterization of isolated strains 6
2.4. Determination of bacterial growth dynamics 7
2.5. DNA extraction, PCR amplification and sequencing 8
2.6. Genomic and phylogenetic characterization of Staphylococcus spp. isolates 9
2.7. Identification of Staphylococcus spp. isolates with species specific primers 11
2.8. Artificial infection 13
2.8.1. Experimental fish 13
2.8.2. Challenge test 13
2.9. Antibiotic susceptibility test 14
2.9.1. Verification on presence of antibiotic resistance gene by in silico PCR 16
2.9.2. Molecular assessment of antibiotic resistance genes 16
2.9.3. Comparative analysis on antibiotic resistance status between isolates of this study and other sources 17
2.10. Determination of virulence factors 20
2.10.1. Detection of icaAB gene associated with biofilm formation 20
2.10.2. Detection of polysaccharide intracellular adhesion (PIA) 21
2.10.3. Hemolytic activity 21
2.10.4. Detection of coagulase activity and clumping factor 22
2.10.5. Lecithinase activity (Nagler reaction) 22
2.10.6. Detection of gelatinase activity 23
2.10.7. Proteolytic activity 23
2.10.8. Lipolytic activity 24
3. Results 25
3.1. Morphological and biochemical characteristics 25
3.2. Growth dynamics of Staphylococcus spp. strains 30
3.3. Genotypic and phylogenetic results of the isolates 31
3.4. Species specific identification of Staphylococci isolates 35
3.5. Artificial infection 36
3.6. Antibiotic susceptibility profile of isolated strains 38
3.7. Resistance gene profile in publicly available genome and isolated strains of S. epidermidis and S. capitis 39
3.8. Comparative antibiotic resistance status between publicly available and isolated strains 40
3.9. Virulence factors of Staphylococcus spp. isolates 44
4. Discussion 47
5. Conclusion 61
References 62
Acknowledgements 85
- Degree
- Master
-
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