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Distribution and dynamics of the marine toxic dinoflagellates Karenia mikimotoi and K. papilionacea in Korean coastal waters using the quantitative real-time PCR method

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Alternative Title
한국 연안에서 정량적 PCR 기법을 이용한 유독 와편모류 Karenia mikimotoi와 K. papilionacea의 분포와 거동 연구
Abstract
Karenia species are marine unarmoured dinoflagellates and some species contain neurotoxic brevetoxins. They have been reported to appear in offshore or coastal areas influenced by oceanic waters. Over the past decades, blooms of Karenia species have developed in many parts of the world, also causing mass animal mortalities, neurotoxic shellfish poisoning and even respiratory problems in humans (Chang 1999; Tester et al. 2000; Yang et al. 2000; Kempton et al. 2002; Botes et al. 2003; de Salas et al. 2004; Naar et al. 2007; Hoagland et al. 2009). Diagnostic characters to identify Karenia species include the extent of the apical groove and the degree of sulcal extension on the ventral epitheca. However, Karenia species are small in size and their cell shapes are easily deformed after fixation, thereby making it difficult to identify species using light microscopy. Karenia papilionacea is reported to produce neurotoxin, namely brevetoxin-2. However, this species showed high similarity with other Karenia species and thereby often misidentified. Recently, K. papilionacea was first recorded to appear in Korean coastal water. In this study, I used real-time polymerase chain reactions to detect and quantify the abundance of K. papilionacea in Korean coastal waters. I designed a set of species-specific primers to amplify the internal transcribed spacer (ITS) region of Karenia papilionacea and developed a real-time quantitative PCR (qPCR) method to investigate the temporal and spatial distribution of Karenia mikimotoi and K. papilionacea in Korean coastal waters. A linear relationship between the Ct and the log of cell number was always demonstrated (R2>0.98) for all standard curves. The efficiency of the reaction (E) calculated by the formula : E=10(1/m)-1 (where m is the slope of the standard curve : -3.295) high. Field samples were collected from a total of 18 sites in Korean coastal waters during the summer of 2017. K. papilionacea was detected in the samples from 8 sites in the South Sea of Korea. By contrast, K. mikimotoi was detected only from 4 sites, but it showed wider distribution than of K. papilionacea. While both K. mikimotoi and K. papilionacea were absent in eight sites, the two species appeared simultaneously in the two sites of Bangjukpo and Magumpo. The two species appeared simultaneously in Bangjukpo and Magumpo. The abundance of K. papilionacea (2553 cells L-1) was higher than that of K. mikimotoi (31 cells L-1) in the Bangjukpo, K. mikimotoi (894 cells L-1) was higher than K. papilionacea (15 cells L-1) in the Magumpo. During the weekly monitoring at the Yongho Bay in Busan from September to December 2017, and June 2018 to April 2019, K. mikimotoi showed relatively low abundance with the highest abundance of 921 cells L-1 on 26 July. By contrast, K. papilionacea showed high abundance with the highest abundance of 9289 cells L-1 on 26 July. This study revealed that the toxic K. papilionacea appeared in all seasons and showed higher abundance than that of K. mikimotoi in Korean coastal waters during the study period. The bloom dynamics and toxicity of K. papilionacea should be determined in further study.
Author(s)
조민지
Issued Date
2022
Awarded Date
2022. 2
Type
Dissertation
Keyword
dinoflagellate qPCR Karenia
Publisher
부경대학교
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/24100
http://pknu.dcollection.net/common/orgView/200000607028
Alternative Author(s)
Minji Cho
Affiliation
부경대학교 대학원
Department
대학원 지구환경시스템과학부해양학전공
Advisor
김선주
Table Of Contents
I. Introduction 1
II. Materials and methods 6
1. Sampling and cultures 6
2. Light microscopy 8
3. Scanning electron microscopy 8
4 . DNA extraction 9
5. PCR and Sequencing 10
6. Specific primer design 11
7. Real-time PCR assay for standard curve construction 14
8. Cell quantification of two Karenia species in environmental samples 15
9. Growth rates as a function of temperature and salinity 17
III. Results 18
1. Morphology of the Korean strain of Karenia papilionacea 18
2. Specificity of designed primer set 20
3. Standard curves and sensitivity of the assay 23
4. Hydrography in the study areas during the study period 25
5. Spatial distributions of two Karenia species in Korean coastal waters 27
6. Seasonal fluctuation and environmental factors in Yongho, Busan 30
7. Growth rate response to temperature and salinity 33
IV. Discussion 39
V. Reference 42
VI. Abstract (in Korean) 45

Supplementary 47
1. Context 47
2. Publication 47

Acknowledgments 57
Degree
Master
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대학원 > 지구환경시스템과학부-해양학전공
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