PUKYONG

Molecular characterization of CathepsinH identified in the sevenband grouper, Hyporthodus septemfasciatus and its functional analysis against NNV infection

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Abstract
Nervous necrosis virus (NNV) has caused mass mortality in aqua-farms of seven band groupers during the summer season and has made huge economic losses in Korea. However, the infection mechanisms of NNV are not clear yet. Cathepsin H, a lysosomal cysteine proteinase involved in overall lysosomal protein breakdown was one of the most highly expressed proteins. The counting sequence of Cathepsin H was 1409 nucleotide lengths. The open reading frame (ORF) of the seven-band grouper Cathepsin H (SG.CatsH) was 987bp in length and the deduced protein consisted of 329 amino acids (approximately 20 kDa molecular weight). The highest identity (98%) from the BLAST search was observed with Cathepsin H from the giant grouper (Epinephelus lanceolatus). The spleen, heart, gill, brain, eye, liver, kidney, and blood of Hyporthodus septemfasciatus and CatsH was highly expressed in the kidney. In the experiment, we made CatsH transfection to striped snakehead cell (SSN-1) fish cell line and challenge with NNV. In NNV infection the gene expression increase in the brain. The expression of SG.CatsH in SSN-1 cells delayed the appened of cytopathic effect (CPE) by NNV infection. Further elucidation indicates that Cathepsin H can significantly delay CPE in the SSN-1 cell line. This study will provide new ideas and effects in the prevention of NNV and understanding of NNV infection mechanisms.
Author(s)
DILINAER AINIWAER
Issued Date
2022
Awarded Date
2022. 8
Type
Dissertation
Publisher
부경대학교
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/32707
http://pknu.dcollection.net/common/orgView/200000642370
Affiliation
부경대학교 대학원
Department
대학원 미생물학과
Advisor
김군도
Table Of Contents
1. Introduction 1
2. Materials and Methods 6
2.1. Fish 6
2.2. Cell culture 6
2.3. Genetic identification of cathepsin 7
2.4. Cloning of Cathepsin H 8
2.4.1 T-Vector cloning 8
2.4.2 pcDNA(3.1)+ Vector cloning 9
2.5 Sequence analysis 10
2.6 In vivo quantitative real-time PCR (qPCR) analysis of SG.CatsH expression 11
2.6.1 The analysis of SG.CatsH various tissues expression on sevenband grouper 11
2.6.2 The analysis of SG.CatsH various tissues expression on sevenband groper after NNV challenge 12
2.7 Cathepsin H Transfection to SSN-1 cell line 13
2.8 Preparation of plasmid DNA standards 14
2.9 Virus preparation 14
2.10 Virus infection 15
2.11 q-PCR analysis of NNV gene expression on cathepsin H 16
3. Results 17
3.1 Cathepsin gene identification 17
3.2 Sequence analysis of cathepsin H 18
3.3 Plylogenetic analysis of SG.catsH protenin 20
3.3.1 Multiple alignment of the SG.catsH amino acid sequence 20
3.3.2 Phylogentic analysis of cathepsin H complete amino acid sequence 22
3.4 The SG.CH gene expression in various tissue from healthy sevenband grouper 23
3.5 The SG.CH expression in various tissue of H.septemfasciatus after NNV infection 25
3.6 The expression of SG.CatsH genes in SSN-1 cell line 26
3.7 The antiviral activity of SG.CatsH expression in SSN-1 cell line 27
3.8 The Effect of CathepsinH expression on NNV replication 28
3.8.1 Absolute quantitative analysis of the NNV RNA2 gene expression during NNV infection 28
3.8.2 Relative quantitative analysis of the NNV RNA2 gene expression during NNV infection 29
4. Discussion 30
5. Korean abstract 34
6. Acknowledgement 35
7. Reference 36
Degree
Master
Appears in Collections:
산업대학원 > 미생물학과
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