PUKYONG

Characterization of ATG14 in NNV infected seven-band grouper, Hyporthodus septemfasciatus

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Abstract
Autophagy plays a regulatory role in maintaining cellular homeostasis and removing viruses by breaking down substances within cells. However, excessive autophagy can lead to the development of cancer and diabetes. Some viruses can exploit autophagy to harm their hosts during their replication. Autophagy-related genes (ATGs) are genes that regulate and mediate the various functions of autophagy. Among them, ATG14 plays an important role in the regulation of autophagy as a subunit of the phosphatidylinositol 3-kinase complex. Recent studies show that autophagy plays an important role in the infection of nervous necrosis virus (NNV). In this study, we identified ATG14 in the seven-band grouper (Hyporthdus septemfasciatus) and confirmed the gene expression levels in several tissues. HS.ATG14 had a length of approximately 300 bp, and the phylogenetic analysis was estimated by determining the alignment result with other organisms. The expression level of HS.ATG14 showed the most significant upregulation in the brain upon NNV infection, with an increase of about 41 times compared to normal conditions in seven-band grouper. HS.ATG14 increased the expression level of RNA 1 and 2 of NNV when overexpressed in SSN-1 cells. Finally, the expression levels of several signaling molecules due to HS.ATG14, which is involved in the infection process of NNV, was checked at the level of RNA expression. This suggests that autophagy affects the seven-band grouper when infected with NNV.
Author(s)
박용준
Issued Date
2024
Awarded Date
2024-02
Type
Dissertation
Publisher
국립부경대학교 대학원
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/33562
http://pknu.dcollection.net/common/orgView/200000740622
Alternative Author(s)
Yong-Jun Park
Affiliation
국립부경대학교 대학원
Department
대학원 해양수산생명과학부 미생물학전공
Advisor
Gun-Do Kim
Table Of Contents
1. Introduction 1
2. Materials & Methods 8
2.1 Fish 8
2.2 Cell culture 8
2.3 Virus preparation and titer measurement 8
2.4 Transcriptome analysis and identification 9
2.5 Cloning of H.septemfasciatus ATG14 (HS.ATG14) 9
2.6 Sequence analysis 10
2.7 In vivo quantitative real-time PCR (qPCR) analysis of HS.ATG14 expression . 10
2.7.1 Tissue distribution of HS.ATG14 mRNA 10
2.7.2 Expression profiles of HS.ATG14 after challenge with NNV . 11
2.8 Plasmid preparation for transfection . 11
2.9. Preparation of plasmid DNA standard 12
2.10. In vitro transfection 12
2.11. Virus infection . 12
2.12. qPCR analysis of viral gene on overexpression of HS.ATG14 13
3. Results 14
3.1. Homology and phylogenetic analysis through HS.ATG14 sequence . 14
3.2. Tissue distribution of HS.ATG14 . 16
3.3. Expression profiles of HS.ATG14 after challenge with NNV 18
3.4. Expression of HS.ATG14 in SSN-1 cell 20
3.5. Effect of HS.ATG14 overexpression on NNV Replication . 22
3.6. Effect of HS.ATG14 overexpression & NNV infection on signaling molecures 24
4. Discussion . 28
5. 국문 초록 . 35
6. REFERENCES . 36
Degree
Master
Appears in Collections:
대학원 > 해양수산생명과학부-미생물학전공
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