PUKYONG

Characterization of recombinant Liver-Expressed Antimicrobial Peptide-2 (LEAP-2) and its antimicrobial activity from olive flounder, Paralichthys olivaceus

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Abstract
Teleost belonging to a subclass of vertebrate families have an acquired immune system comparable to higher mammals in addition to innate immune system. Liver-expressed antimicrobial peptide-2 (LEAP-2) is a cysteine-rich peptide known to play an important role in the innate immune system of fish. In this study, RT-PCR was carried out to obtain the gene encoding LEAP-2 of olive flounder, Paralichthys olivaceus, and to analyze its tissue-specific expression pattern. The gene region encoding the except for signal peptide of LEAP-2 was amplified from cDNA synthesized using RNA extracted from liver of olive flounder and was cloned into the expression vector pET-44a(+) with his6-tag at the C-terminus. The rOfLEAP-2 was expressed in Escherichia coli BL21 (DE3 codon plus) upon induction with IPTG. The rOfLEAP-2 was purified (from E. coli) by using nickel column and were subject to various antimicrobial activity analysis against Gram-positive (Bacillus subtilis, Lactococcus garvieae, Streptococcus parauberis) and Gram-negative bacteria (E. coli, Vibrio harveyi, Edwardsiella tarda). The sequence of the gene encoding LEAP-2 from olive flounder was identified to has an open reading frame of 309 bp, which encodes a protein consisting of 102 amino acids. In tissue-specific expression analysis, LEAP-2 gene showed predominant expression in liver and lower expression in intestine. The purified rOfLEAP-2 showed distinguishable antimicrobial activity against all bacteria except E. tarda, tested. Upon testing in combination with ampicillin and LEAP-1, the result showed a synergistic effect against B. subtilis and V. harveyi as verified by the fractional inhibitory concentration index (FICI). The result from outer membrane permeability test performed using N-phenylnaphthalen-1-amine (NPN) showed a distinguishable outer membrane permeability by rOfLEAP-2. The result was also confirmed by scanning electron microscope assay (SEM) showing a disrupted surface morphology of E. coli upon incubation with rOfLEAP-2.
Author(s)
임민혁
Issued Date
2024
Awarded Date
2024-02
Type
Dissertation
Keyword
LEAP-2, antimicrobial activity, olive flounder
Publisher
국립부경대학교 대학원
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/33563
http://pknu.dcollection.net/common/orgView/200000744341
Alternative Author(s)
MIN-HYUK IM
Affiliation
국립부경대학교 대학원
Department
대학원 수산생물학과
Advisor
Jong-Myoung Kim
Table Of Contents
I . Introduction 1
Ⅱ. Materials and Methods 4
1. RT-PCR & Bioinformatics analysis 4
1-1. RNA extraction 4
1-2. cDNA synthesis 5
1-3. Tissue expression pattern analysis (LEAPs) 6
1-4. Bioinformatic analysis of olive flounder LEAP-2 6
2. Production of recombinant OfLEAP-2-like protein 9
2-1. TA cloning 9
2-2. Induction & Expression of rOfLEAP-2 10
2-3. Purification of rOfLEAP-2 11
3. Antimicrobial susceptibility test 12
3-1. Ultrasensitive radial diffusion assay (URDA) 12
3-2. Colony counting method 13
3-3. Synergistic effect test (with ampicillin and LEAP-1) 14
3-4. Outer membrane permeability test (NPN uptake) 15
3-5. Scanning Electron Microscope Assay (SEM) 16
Ⅲ. Results 17
1. Tissue expression pattern & Bioinformatics analysis 17
2. Purification of rOfLEAP-2 protein 26
3. Antimicrobial activity 30
3-1. URDA 30
3-2. Colony counting method 33
3-3. Synergistic effect analysis 36
3-4. Outer membrane permeability test (NPN uptake) 38
3-5. SEM 40
Ⅳ. Discussion 42
Ⅴ. Abstract (Korean) 44
Ⅵ. Reference 46
Degree
Master
Appears in Collections:
대학원 > 수산생물학과
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