PUKYONG

Induction of apoptosis in AGS and HepG2 cancer cells using Indole-3-Carbinol and Angelica keiskei extracts

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Abstract
One of the most common diseases in the world is cancer. Action is still required in the face of the formidable global health challenge posed by cancer. Cancer is a disease that occurs when specific body cells proliferate abnormally out of control and migrate to other body areas. Following the standard view of the disease, cancer is an assortment of progressive genetic abnormalities caused by mutations in tumor-suppressor genes, oncogenes, and chromosomal abnormalities. Cancer chemoprevention uses natural or biological compounds to reduce the risk of developing cancer in healthy people. Chemopreventive drugs prevent cancer growth by preventing DNA damage, which results in spite, or by reversing or preventing the division of premalignant cells with DNA damage. Most of the pharmaceuticals employed nowadays are derived from plants, making them one of the more significant sources of medicine. Differential drug response and safe dosages are the main challenges to such prediction. It is safe to treat with IC50 doses to avoid the side effects of the drugs that kill normal cells and cancer cells. Clinical studies have shown that phytochemicals and herbs are the most efficient way to treat cancer, whether added to chemotherapy or taken separately to boost the immune system without any side effects. Gastric cancer is the second-leading cause of cancer-related deaths globally. One known fact is that Helicobacter pylori infects the stomach's inner lining and causes cancer. In this research, Indole-3-Carbinol is used as an anticancer drug against the AGS cancer cells. Cell viability was performed to check the compound's anticancer activity. DNA fragmentation was utilized to assess DNA degradation, and DAPI labeling was employed to identify nuclear condensation. The qPCR technique was used to measure apoptotic gene expression. I3C demonstrated a strong affinity for the apoptotic protein 3DCY per molecular docking study. This work explores the remarkable anticancer, antioxidant, and antibacterial properties and the safest drug delivery applications. Angelica keiskei Crude was extracted using the subcritical water extraction method. Antioxidant activity was evaluated using a DPPH radical scavenging assay. MTT assay was done to check the compound's anticancer activity on MDA-MB-231 cells. HAp was used for drug delivery. UV-Vis study was performed to check the photothermal efficacy, drug loading, and releasing capacity. A hemolysis research was conducted to determine the biocompatibility and safety of the compounds. Molecular docking was performed to check the binding affinity with the bacterial proteins. Hepatocellular carcinoma (HCC) is the most common type of primary liver cancer. In the present study, the Angelica keiskei extract’s active compound identified by GC-MS is 3, - Dihydro-3, 5-dihydroxy-6-methyl-4H-pyran-4-one (DDMP) induced apoptosis in HepG2 cells. Cell viability was decreased in a dose-dependent manner after the MTT test. The study's main emphasis, the Antibody Apoptotic Array that has checked the 43 genes' expression together, identified significant changes in apoptotic proteins. Western blot analysis and molecular docking further confirmed the expression of apoptotic proteins and binding affinity. This work is distinct and has never been done using the mentioned cells and techniques. This can help further study the precise molecular mechanism of action.
Author(s)
SINGH ALKA
Issued Date
2024
Awarded Date
2024-02
Type
Dissertation
Keyword
cell biology, moelcular biology, Angelica keiskei
Publisher
국립부경대학교 대학원
URI
https://repository.pknu.ac.kr:8443/handle/2021.oak/33600
http://pknu.dcollection.net/common/orgView/200000745231
Affiliation
국립부경대학교 대학원
Department
대학원 해양수산생명과학부 미생물학전공
Advisor
Gun-Do Kim
Table Of Contents
Chapter 1. General Introduction 1
1.1. Cancer 3
1.2. Gastric Cancer 4
1.3. Helicobacter pylori (H. pylori) 6
1.3.1. The virulence and pathogenicity of H. pylori 8
1.3.2. Metabolic Modification by H. pylori 9
1.4. Treatment of gastric cancer 11
1.4.1. Surgery 11
1.4.2. Chemotherapy 12
1.4.3. Radiation therapy 13
1.4.4. Targeted therapy 14
1.4.5. Immunotherapy 14
1.5. Hepatocellular Carcinoma (HCC) 15
1.6. Cellular malignancy-related markers 16
1.7. HCC Sequential Development 16
1.7.1. Tumor necrosis factor-alpha and interleukin-6 (TNF- α and IL-6) 16
1.7.2. Nuclear Factor-κβ (NF-κβ) 17
1.7.3. Transforming growth factor alpha (TGFα) 17
1.8. Hepatocellular Carcinoma’s (HCCs) Molecular Targeted Therapies 18
1.8.1. Anti-Angiogenic Agents 18
1.8.2. Immunotherapy in the Treatment of HCC 19
1.9. Treatment Challenges for HCC Patients 19
1.10. Indole-3-carbinol 20
1.11. Angelica keiskei 24
1.12. Aims of the present study 27
Chapter 2. Indole-3-Carbinol Regulates Apoptosis in AGS Cancer Cells via the BCL-Family Genes 28
2.1. Abstract 28
2.2. Introduction 29
2.3. Materials and methods 33
2.3.1. Reagents 33
2.3.2. Cell culture 33
2.3.3. Cell viability assay 33
2.3.4. DAPI staining (4',6-diamidino-2-phenylindole staining) 34
2.3.5. DNA fragmentation 35
2.3.6. RNA extraction and cDNA synthesis 35
2.3.7. Real-Time quantitative PCR 36
2.3.8. Molecular Docking Analysis of I3C with P53 38
2.3.9. Statistical analysis 38
2.4. Results 38
2.4.1. Effects of I3C on normal cells and AGS cells 38
2.4.2. Nuclei express consistent morphological changes during apoptosis by I3C. 41
2.4.3. DNA degradation and cellular death 43
2.4.4. Apoptosis induction via mitochondrial pathway by expressing BH- 3 subfamily genes 45
2.4.5. Molecular docking between I3C and p53 protein 48
2.5. Discussion 50
2.6. Conclusion 61
Chapter 3. Angelica keiskei: A potential antioxidant and anticancer agent for photothermal drug delivery applications 63
3.1. Abstract 63
3.2. Introduction 64
3.3. Materials and methods 68
3.3.1. Sample collection 68
3.3.2. Crude extraction 68
3.3.3. Total phenolic content (TPC) and antioxidant activity assay 71
3.3.4. GC-MS 71
3.3.5. Synthesis of Hydroxyapatite (HAp) 72
3.3.6. UV-Vis study 72
3.3.7. Drug loading and releasing study 73
3.3.8. Cell cytotoxicity test 75
3.3.9. Fluorescence imaging of MDA-MB 231 cells 75
3.3.10. Photothermal therapy 76
3.3.11. Hemolysis study 76
3.3.12. Molecular docking analysis to check antibacterial activities 77
3.4. Results 77
3.4.1. Total phenolic content (TPC) and Radical Scavenging Activity 77
3.4.2. Compound identification and chromatogram by GC-MS analysis based on Wileylib. 80
3.4.3. The biological function of the 2,3-dihydro-3,5-dihydroxy-6-methyl-4H- pyran-4-one (DDMP) 84
3.4.4. XRD analysis of HAp 84
3.4.5. UV-Vis study 85
3.4.6. Drug loading and releasing study 88
3.4.7. Effect of AKLE on MDA-MB 231 cells 92
3.4.8. Double labeling for AO and PI fluorescence analysis of cell viability 92
3.4.9. Photothermal therapies (PTT) 94
3.4.10. Hemolysis study 98
3.4.11. Molecular Interaction between DDMP and beta-lactamase using docking analysis 103
3.4.12. Molecular Interaction between DDMP and penicillin-binding proteins using docking analysis 105
3.5. Discussion 107
3.6. Conclusion 108
Chapter 4. Angelica keiskei extracts induce apoptosis in HepG2 cells by neutralizing the function of IGFBP1 protein 112
4.1. Abstract 112
4.2. Introduction 113
4.3. Materials and methods 116
4.3.1. Reagents 116
4.3.2. Cell culture 116
4.3.3. MTT assay 116
4.3.4. Human Apoptotic Array Screening 117
4.3.5. Sample preparation 117
4.3.6. Antibody array assay 118
4.3.7. Data analysis 119
4.3.8. Protein extraction and Western blotting 120
4.3.9. Molecular docking analysis 121
4.4. Results 121
4.4.1. Cytotoxic effect and morphological alteration of Angelica keiskei on HepG2 cells 121
4.4.2. Protein expression alteration using the apoptotic array analysis 123
4.4.3. Identification of differentially expressed apoptotic proteins using cluster heatmap. 126
4.4.4. Protein-protein interaction network investigation 129
4.4.5. Functional enrichment analysis 132
4.4.6. Western blotting analysis of apoptotic proteins 134
4.4.7. Computational analysis of DDMP with IGFPB1, Bcl-2 and P53 protein 136
4.5. Discussion 138
4.6. Conclusion 142
References 144
요약 174
Acknowledgement 176
Degree
Doctor
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